TABLE 13A: ALL genes as an Alternative Gene Set for DNA methylation gene set or Gene Expression  or lineage marker propensity differentiation assay																																																																																																																																																																																																																																																															

All categories (1405 genes included)																																																																																																																																																																																																																																																															
Included:	ABCA4	ABCB1	ABCB10	ABCB7	ABCC2	ABCG2	ACAN	ACE	ACHE	ACIN1	ACO1	ACPP	ACTA1	ACTA2	ACTB	ACTC1	ACTG1	ACTN1	ACVR1	ACVR1B	ACVR2A	ACVRL1	ADAM12	ADAMTS13	ADIPOQ	AEBP1	AFP	AGBL2	AGGF1	AGR2	AHCTF1	AHSA1	AHSG	AKAP12	AKR1C4	ALAS2	ALB	ALCAM	ALDH1A1	ALDH3A2	ALMS1	ALOX12B	ALOX15	ALPK3	ALPL	ALS2	ALX1	AMH	AMIGO1	AMOT	ANG	ANGPTL2	ANGPTL3	ANGPTL4	ANKH	ANPEP	ANXA1	ANXA6	APBB1	APOA1	APOA2	APOB	APOE	APOF	AQP4	AR	AREG	AREGB	ARG1	ARHGEF15	ARID1A	ARID3B	ARSA	ARTN	ARX	ASB3	ASCL1	ASPSCR1	ATP2A2	ATP2A3	ATP2B2	ATP2C1	ATP6V0A4	ATP6V1B1	ATPIF1	ATXN1	AZU1	B3GALT5	B3GAT1	B3GNTL1	BAI1	BAIAP2	BARX1	BCL10	BCL2	BDNF	BGLAP	BGN	BIK	BMI1	BMP10	BMP2	BMP4	BMP7	BMP8B	BMPER	BMPR1A	BMPR1B	BMPR2	BNC1	BOC	BRCA1	BRSK2	BSG	BST1	BST2	BTD	BTG1	BTG4	BXDC2	C10orf137	C12orf56	C16ORF80	C1GALT1	C1ORF77	C4BPB	C8A	CACNA1C	CACNA1H	CACNB2	CALCA	CALCB	CALCRL	CALML5	CAMK2A	CAMK2B	CAMK2D	CAMK2G	CAMK4	CANX	CAPN1	CAPN3	CARTPT	CASP10	CASP14	CASQ2	CASR	CAT	CAV2	CAV3	CCDC11	CCDC80	CCKBR	CCL11	CCL27	CCM2	CCR2	CCR4	CCR5	CD109	CD14	CD151	CD164	CD19	CD1A	CD1B	CD1C	CD1D	CD1E	CD2	CD209	CD22	CD24	CD244	CD247	CD27	CD276	CD28	CD33	CD34	CD36	CD37	CD38	CD3D	CD3E	CD3G	CD4	CD40	CD44	CD46	CD48	CD5	CD55	CD59	CD6	CD69	CD7	CD70	CD72	CD79A	CD80	CD81	CD82	CD84	CD86	CD8A	CD8B	CD9	CD93	CD96	CD97	CDC27	CDC42	CDCA4	CDCP1	CDH1	CDH13	CDH15	CDH2	CDH3	CDH5	CDK5	CDK5R1	CDK6	CDKN2A	CDKN2B	CDSN	CDX2	CDX4	CEACAM1	CEACAM5	CEACAM6	CEBPA	CEBPB	CEBPG	CELSR1	CENPF	CENTA2	CEP152	CER1	CFDP1	CFTR	CGB	CH25H	CHAT	CHI3L2	CHRD	CHRDL1	CHRM3	CHRNA1	CHRNA7	CHRNE	CHUK	CIB2	CIDEA

Ectoderm germ layer (88 genes included)																																																																																																																																																																																																																																																															
Included:	ABCB1	ABCG2	AGR2	APOE	B3GAT1	CD24	CD44	CD81	CDH2	CHAT	CHRD	CNTN1	CRABP2	CSPG5	CXCR4	DCX	DLG4	EDA	EN1	ENO2	FAS	FGFR2	FN1	FUT4	GABRA1	GAD2	GAP43	GATA2	GATA3	GCM2	GFAP	GLUL	GRIA2	GRID2	GRIK1	GRM1	HAND1	ICAM1	INA	ITGA4	ITGA6	ITGB1	JAG1	LHX1	LHX3	MAP2	MAPT	MCAM	MKI67	MNX1	NCAM1	NCSTN	NEFH	NEFL	NEFM	NES	NEUROG3	NGFR	NOG	NOTCH1	NRP2	NTRK2	OTX2	PAX3	PAX5	PAX6	PAX7	PDGFRA	PIK3R4	PVRL2	S100B	SMN1	SNAI2	SNCA	SOX10	SOX2	SOX9	STX1A	SYN1	SYP	SYT1	TDGF1	TH	THY1	TP63	TUB	VIM	ZEB2																																																																																																																																																																							

Mesoderm germ layer (148 genes included)																																																																																																																																																																																																																																																															
Included:	ABCB1	ABCG2	ACTA2	ACTB	ACTN1	ADIPOQ	ALCAM	ANPEP	ANXA6	BMP2	BSG	BST1	CAMK4	CAPN1	CAV2	CAV3	CCR2	CD109	CD14	CD151	CD164	CD19	CD2	CD209	CD24	CD33	CD34	CD36	CD38	CD4	CD44	CD48	CD55	CD59	CD79A	CD84	CD9	CD93	CD97	CDCP1	CDH1	CDH15	CDH2	CDH5	CEACAM1	CEACAM6	CSF1R	CSF2RA	CSF3	CSF3R	CTLA4	CXCL10	CXCR4	DES	DLL1	DNTT	ENG	ENO3	FABP4	FCGR3A	FCGR3B	FGF5	FN1	FOXA2	FUT4	GATA3	GATA4	GJA1	GPC3	GSC	HAND1	HES7	HFE2	HHEX	HIF1A	HLA-DRA	ICAM1	ICAM2	IGFBP3	IL1R1	IL32	IL4R	IL7R	INHBA	ITGA2B	ITGA4	ITGA5	ITGA6	ITGAL	ITGAM	ITGAV	ITGAX	ITGB1	ITGB2	ITGB3	KDR	KIT	LEF1	LRP1	MCAM	MEOX1	MESDC2	MIXL1	MME	MS4A1	MSH3	MYH3	MYOD1	MYOG	NCAM1	NES	NFYA	NGFR	NODAL	NOTCH1	NT5E	OSR1	PECAM1	PROCR	PTPRC	PVRL2	SDC1	SELE	SELL	SELP	SPI1	SRF	STAT3	T	TAZ	TEK	TFRC	TGFB1	THBD	THY1	TIE1	TNFRSF10B	TNFRSF1A	TNFRSF1B	TNFSF10	TNFSF4	TNNI3	TWIST1	VCAM1	VIM	WAS	WNT3A	WNT8A																																																																																																											

Endoderm germ layer (50 genes included)																																																																																																																																																																																																																																																															
Included:	ALB	APOE	CD44	CDCP1	CDH2	CDX2	CLDN6	CTNNB1	CXCR4	DLX3	DLX5	FABP1	FABP2	FGF23	FOXA1	FOXA2	FOXG1	GAD2	GATA3	GATA4	GATA6	GCG	HNF1A	HNF1B	HTATSF1	ID4	ISL1	ITGA6	ITGB1	LRP2	MIXL1	NEUROG3	NKX2-5	NPNT	NRP2	PAX6	PAX9	PDX1	RAB15	RIPK4	SLC2A2	SOX17	SOX7	SPARC	SST	STRA6	SYP	THY1	TMPRSS2	VIM																																																																																																																																																																																																													

Pluripotent cell signature (128 genes included)																																																																																																																																																																																																																																																															
Included:	ABCG2	AHSA1	ALPL	ARID3B	B3GALT5	BMPR2	CAMK2A	CCR4	CD24	CD9	CDH1	CDKN2A	CDX2	CREBBP	CSNK1E	CSNK2A1	CSNK2B	CTNNA1	CTNNB1	CTNND1	DDIT3	DDX3X	DDX4	DLL1	DPPA4	DPPA5	DZIP1	E2F1	E2F2	E2F3	EHMT2	EP300	EPCAM	EPHB2	ERAS	FGF10	FGF2	FOXD3	FUT4	FZD5	GDF3	GNL3	GREM1	GREM2	GSK3B	HDAC3	HESX1	HMMR	HOXB8	HOXC13	HOXD8	ID1	ID2	ID3	IFNGR1	IL6ST	IRF6	ITGA6	ITGB1	JAG1	JMJD6	KIT	KITLG	KLF4	KRT7	LIN28	LRIG3	MAP2K1	MAP2K2	MAPK1	MAPK3	MAPK6	MELK	MYC	NACC1	NANOG	NCSTN	NEUROG3	NODAL	NOTCH1	NR5A2	NR6A1	PODXL	POU5F1	PROM1	PUM2	RAF1	RBL1	ROCK1	ROCK2	SALL4	SGK1	SHB	SHH	SIPA1	SMAD2	SMAD4	SNX6	SOX17	SOX2	SP1	ST3GAL3	STAT1	STAT3	STAT4	STAT5A	STAT6	STRA8	TACSTD2	TDGF1	TERT	TFCP2L1	TFDP1	TGIF1	TNFRSF8	UTF1	WNT16	YBX1	YWHAQ	ZFP42	ZFP57	ZFX	ZIC3	ZMYM2	ZNF219	ZNF281	ZNF323	ZSCAN10																																																																																																																															

Male/female classification (5 genes included)																																																																																																																																																																																																																																																															
Included:	DDX3X	DDX3Y	RPS4Y1	SRY	XIST																																																																																																																																																																																																																																																										

Neural lineage (252 genes included)																																																																																																																																																																																																																																																															
Included:	ABCB1	ABCG2	ALDH1A1	ALS2	AMIGO1	APOE	ARTN	ASCL1	ATP2B2	AZU1	BAI1	BAIAP2	BARX1	BMP2	BMP4	BRSK2	BTG4	CAMK2A	CAMK2B	CAMK2D	CAMK2G	CD24	CD34	CD81	CDH2	CDK5	CDK5R1	CDK6	CEACAM1	CEACAM5	CHAT	CHRD	CHRDL1	CIT	CLN5	CNTF	CNTN1	CNTN4	CSPG5	CST3	CTNND2	CXCR4	CYFIP1	DBX2	DCX	DGCR6	DLG4	DLK1	DLL1	DLX1	DLX2	DLX5	DPYSL5	DTX1	EIF2B1	EIF2B2	EIF2B3	EIF2B4	EIF2B5	ELAVL4	EMX1	EN1	ENO2	EOMES	EPHB4	ETV1	EYA3	FABP7	FARP2	FAS	FCGR3A	FCGR3B	FEZ1	FEZ2	FGF2	FGF8	FGFR2	FGFR3	FGFR4	FN1	FOXD3	FUT4	FZD9	GABRA1	GAD2	GAP43	GDF7	GDNF	GFAP	GHRL	GLI2	GLUL	GNL3	GRIA2	GRID2	GRIK1	GRM1	GSX1	HAS3	HES5	HFE2	HMGA2	ICAM1	IPMK	ISL1	ISL2	ITGA4	ITGA6	ITGAM	ITGB1	JAG1	KAL1	KCNIP2	KLK8	KRT2	LAMB1	LAMP1	LBX1	LDB1	LHX1	LHX2	LIN28	LLGL1	LMX1A	LMX1B	LRRC4C	LST1	MAP1S	MAP2	MAPT	MCAM	MDGA1	MEF2C	MKI67	MNX1	MSI1	MSI2	MSX1	NCAM1	NCSTN	NEDD1	NEFH	NEFL	NEFM	NES	NEUROD1	NEUROD2	NEUROG1	NF1	NF2	NGF	NGFR	NKX2-5	NLGN1	NOG	NOTCH1	NOTCH2	NOTCH3	NPTN	NR2E1	NRCAM	NRP1	NRP2	NRTN	NRXN1	NRXN3	NTNG1	NTNG2	NTRK2	OLFM1	OLIG2	OPHN1	OTX2	PARD3	PARD6B	PAX2	PAX3	PAX5	PAX6	PCSK9	PICK1	PIK3R4	PLAGL1	POU4F1	POU5F1	POU6F2	PPT1	PROM1	PTPRC	PVRL2	RACGAP1	RND1	ROBO1	ROBO2	RTN1	RTN4	RTN4RL1	RTN4RL2	RUNX1	S100B	SDC1	SEMA3B	SEMA4F	SERPINF1	SHH	SIAH1	SIGLEC7	SLC1A3	SLC2A1	SLIT1	SLIT2	SMARCA1	SMARCA4	SMN1	SNAI2	SNCA	SOD1	SOX1	SOX10	SOX11	SOX12	SOX2	SOX4	SOX9	SPON2	STX1A	SYN1	SYP	SYT1	TAGLN3	TBX6	TCF3	TCF4	TFRC	TGFB2	TGIF1	TH	THY1	TMEM176B	TNC	TRAPPC4	TSPAN2	TUB	TUBB3	TWIST1	UBB	UNC5C	VIM	VWC2	YWHAG	YWHAH	ZEB2			

Hematopoietic lineage (257 genes included)																																																																																																																																																																																																																																																															
Included:	ABCB1	ABCB7	ABCG2	ACE	AHCTF1	ALB	ALDH1A1	ANGPTL2	ANPEP	ATXN1	BMI1	BMPR1A	BST2	C10orf137	CAMK4	CD14	CD164	CD19	CD1A	CD1B	CD1C	CD1D	CD1E	CD2	CD22	CD24	CD244	CD247	CD27	CD276	CD28	CD33	CD34	CD36	CD37	CD38	CD3D	CD3E	CD3G	CD4	CD40	CD44	CD48	CD5	CD55	CD59	CD6	CD69	CD7	CD70	CD72	CD79A	CD80	CD84	CD86	CD8A	CD8B	CD9	CD93	CD96	CD97	CDCA4	CDCP1	CDH1	CDH2	CDH5	CDX4	CEACAM1	CEACAM5	CLEC9A	CPA3	CR1	CR2	CSF1	CSF1R	CSF2	CSF2RA	CSF3	CSF3R	CTLA4	CXCR4	DLK1	DLL1	DLX1	DNTT	DPP4	DYRK3	EBF1	ENG	ENPEP	EPHB4	EPO	EPOR	EPX	ERG	ERMAP	ETV1	ETV2	FAIM2	FAS	FASLG	FCER2	FCGR1A	FCGR2A	FCGR2B	FCGR2C	FCGR3A	FCGR3B	FLT3	FLT3LG	FLVCR1	FSTL3	FUT4	GAS6	GATA1	GATA2	GATA3	GCNT2	GIMAP4	GNA15	GP1BA	GP1BB	GP5	GP9	GYPA	HAS3	HBS1L	HEMGN	HFE	HLA-DRA	HLA-DRB1	HLA-DRB3	HLA-DRB4	HLA-DRB5	HOXB3	HOXB4	ICAM1	ICAM2	IFNGR1	IGHD	IGHM	IL11	IL11RA	IL1A	IL1B	IL1R1	IL1R2	IL1RN	IL2RA	IL2RB	IL3	IL32	IL3RA	IL4	IL4R	IL5	IL5RA	IL6	IL6R	IL7	IL7R	IL9R	IRF6	IRGM	ITGA1	ITGA2	ITGA2B	ITGA3	ITGA4	ITGA5	ITGA6	ITGAE	ITGAL	ITGAM	ITGAV	ITGAX	ITGB2	ITGB3	ITGB7	JAG1	JAG2	JMJD6	KDR	KIT	KITLG	KLF6	KRT7	LAMP1	LAMP2	LHX2	LMO2	LXN	MAEA	MEIS1	MLF1	MLL5	MME	MNDA	MPL	MS4A1	MSH3	NCAM1	NCR3	NFYA	NMT1	NOTCH1	NOTCH3	PBX1	PCGF2	PECAM1	PHC1	PIM1	PIWIL1	PODXL	PRNP	PROCR	PROM1	PTPRC	RUNX1	SAMSN1	SDC1	SELL	SELP	SIGLEC7	SLAMF1	SLC3A2	SOCS3	SPEN	SPN	T	TAL1	TBX21	TEK	TFRC	THBD	THPO	THY1	TMEM176B	TNF	TNFRSF1A	TNFRSF4	TNFRSF9	TPO	TRA@	TRIB1	TRIB2	TRIM22	TRIM33	USE1	VCAM1	VNN1	VNN2	VPREB3	VWF	WAS

Epidermis (124 genes included)																																																																																																																																																																																																																																																															
Included:	ALDH3A2	ALOX12B	ANXA1	ATP2A2	ATP2C1	BCL2	BNC1	BTD	CALML5	CASP14	CDSN	CEBPA	CHUK	COL17A1	COL1A1	COL5A2	COL7A1	CRABP2	CSTA	CTGF	DAXX	DCT	DHCR24	DSP	EGF	EGFR	EMP1	ERCC2	ERCC3	EREG	ETS1	ETS2	EVPL	FABP5	FGF7	FLOT2	FOS	FOXN1	FST	GJB5	GLI1	HOXA7	HOXB13	HRAS	IKBKB	IL20	ITGA6	IVL	JUN	KLK5	KLK7	KRT1	KRT10	KRT13	KRT14	KRT15	KRT16	KRT17	KRT2	KRT31	KRT32	KRT34	KRT5	KRT83	KRT85	KRT9	KRTAP5-9	LAMA3	LAMB3	LAMC2	LOR	MAP2K1	MAP2K3	MAP2K4	MAP2K6	MAP2K7	MAP3K1	MAP3K14	MAP3K5	MAPK1	MAPK13	MAPK14	MAPK3	MAPK8	NFKB1	NFKBIA	NME2	PLOD1	POU2F3	PPARD	PPP2CA	PRKCA	PRKCB1	PRKCD	PRKCE	PRKCG	PRKCH	PRKCQ	PTCH2	PTHLH	RAF1	RBP2	RELA	RIPK1	S100A7	SASP	SCEL	SP1	SPINK5	SPRR1A	SPRR1B	STS	TFRC	TGFB2	TGM1	TGM3	TGM5	TNF	TNFRSF1A	TNFRSF1B	TRAF2	TXNIP	UGCG	WAS																																																																																																																																			

Mesenchymal stem cell (117 genes included)																																																																																																																																																																																																																																																															
Included:	ACAN	ACTA2	ACTG1	ADIPOQ	ALPL	ALX1	ANPEP	ASPSCR1	BGLAP	BGN	BMP2	BMP8B	BMPER	BMPR1A	BMPR1B	BMPR2	BOC	CCDC80	CD14	CD34	CD3E	CD44	CEACAM1	CEACAM5	CFDP1	CHI3L2	CNN1	COL1A1	COL1A2	COL2A1	COL3A1	COL4A2	COL4A4	COMP	CRTAC1	CSF1R	CSF2RA	CYR61	DBX2	DCN	DES	DMD	DMP1	ENG	FABP3	FABP4	FAM65B	FBXO32	FCGR3A	FCGR3B	FGF8	FLII	FMOD	FN1	FNDC3B	FSTL3	FUT4	GAS6	GATA4	GDF10	GLMN	GNL3	IBSP	ICAM2	ITGA1	ITGAM	ITGB1	ITGB1BP3	KIT	KLF5	LBX1	LEP	LPL	MEF2C	MESDC2	MKL1	MME	MTM1	MYF5	MYL2	MYOG	MYOM2	NGFR	NKX2-5	NOC3L	OSTN	PAMR1	PAX3	PAX7	PDGFC	PECAM1	PPARG	PTHLH	ROR2	RUNX2	SCXA	SFRP2	SIX2	SLC2A4	SOX9	SP7	SPARC	SPP1	SPRY2	SRPK3	STC2	TAGLN3	THPO	TNC	TNFRSF1A	TNNT2	TWIST2	VCAM1	VNN1	WISP2	WISP3	WWTR1																																																																																																																																										

Bone (53 genes included)																																																																																																																																										
Included:	ACHE	ACVR1	AHSG	ALPL	ALX1	ANKH	ATP6V0A4	ATP6V1B1	BGLAP	BGN	BMP2	BMP4	CALCA	CARTPT	CASR	CCDC80	CDK6	CFDP1	COL13A1	COL1A1	COL1A2	COL3A1	DCN	DMP1	DSPP	FN1	FSTL3	GDF10	GLI1	GLI2	IBSP	IGFBP3	IL7	KL	MC4R	MEPE	MGP	MSX1	NF1	OSTF1	OSTN	ROR2	RUNX2	SOX9	SP7	SPARC	SPP1	STATH	THPO	TPO	TPP1	TWIST2	ZNF675																																																																																					

Cartilage (23 genes included)																																																																																																																																										
Included:	ACAN	ALX1	BMP2	BMPER	CD151	CD44	CFDP1	CHI3L2	COL2A1	COL3A1	COL4A2	COL4A4	COMP	CRTAC1	DMP1	EPYC	FMOD	GAS6	GDF10	SCXA	SIX2	SOX9	VNN1																																																																																																																			

Fat (41 genes included)																																																																																																																																										
Included:	ADIPOQ	ASPSCR1	BMPR1A	CCDC80	CD34	CEBPA	CEBPB	CEBPG	CIDEA	DIO2	DLK1	ELOVL3	EN1	FABP2	FABP3	FABP4	FNDC3B	FOXC2	HOXA1	HOXA4	HOXA5	HOXC4	HOXC9	LEP	LPL	LRP2	NOC3L	NR2F1	PAPPA	PCSK9	PECAM1	PPARA	PPARG	PPARGC1A	PRDM16	SFRP1	SHOX2	SLC2A4	TCF21	THBD	UCP1																																																																																																	

Muscle (130 genes included)																																																																																																																																										
Included:	ACHE	ACTA1	ACTA2	ACTB	ACTG1	ACTN1	ADAM12	AEBP1	BMP4	BOC	CACNA1H	CACNB2	CAPN1	CAPN3	CDH15	CDH2	CENPF	CHRNA1	CNN1	CNN2	COL4A4	COL5A3	COL6A3	CSRP3	CTF1	CXCL10	DES	DMD	EGR2	EGR3	EMD	ENO3	EREG	EVC	FABP3	FAM65B	FBXO32	FGF8	FHL3	FOXL2	GAA	GATA4	GATA6	GLMN	GYLTL1B	HBEGF	HDAC4	HDAC5	HDAC7A	HDAC9	IFRD1	IGF1	IGFBP3	ITGA11	ITGA7	ITGB1BP2	ITGB1BP3	KCNH1	KRT19	LAMA2	LARGE	LBX1	MAPK12	MBNL1	MCAM	MEF2A	MEF2B	MEF2C	MEF2D	MKL1	MKL2	MKX	MRAS	MTM1	MUSK	MYBPC3	MYEF2	MYF5	MYF6	MYH11	MYH3	MYH6	MYH7	MYL2	MYL3	MYL6	MYL6B	MYOD1	MYOG	MYOM2	MYOZ1	NF1	NKX2-5	NOTCH1	NRD1	PAMR1	PAX3	PAX7	POU6F1	SFRP2	SGCA	SGCB	SGCD	SGCE	SGCG	SIRT2	SIX1	SMTN	SOD1	SOX10	SPEG	SRI	SRPK3	SVIL	SYNE1	TAGLN	TAGLN3	TAZ	TBX3	TCF12	TEAD4	TGFB1	TNNI3	TNNT2	TTN	TWIST1	UBB	UTRN	VAMP5	VIM								

Blood vessel (138 genes included)																																																																																																																																										
Included:	ACE	ACTA2	ACVRL1	AGGF1	ALCAM	AMOT	ANG	ANGPTL2	ANGPTL3	ANGPTL4	ATPIF1	BMPER	BSG	BST1	BTG1	C1GALT1	CALCA	CANX	CCM2	CCR2	CD109	CD14	CD151	CD209	CD34	CD36	CD93	CDH13	CDH2	CDH5	CHRNA7	COL4A2	COL4A3	CSF1R	CSF2RA	CTLA4	CUL7	CXCL10	CXCR4	DLG1	EGF	EGFL7	EMCN	ENG	EPHB4	EPO	FCGR3A	FCGR3B	FGF10	FGF2	FGF8	FGFR2	FGFR3	FGFR4	FOXC2	FUT4	GHRL	GLMN	HIF1A	HOXA9	HTATIP2	ICAM1	ICAM2	IL11	IL17F	IL18	IL1R1	IL4R	IL8	INHBA	ITGA2B	ITGA4	ITGA5	ITGA6	ITGAV	ITGB1	ITGB2	ITGB3	JAG1	KDR	KIT	MCAM	MKL1	MYH9	NCAM1	NCL	NES	NF1	NOTCH4	NPPB	NPR1	PDGFC	PDPN	PECAM1	PF4	PLG	PML	PODXL	PPP1R13B	PROCR	PROK2	PTPRC	PVRL2	RASA1	RHOB	RNH1	ROBO4	RTF1	RUNX1	SCG2	SCYE1	SELE	SELL	SELP	SERPINF1	SHH	SPARC	SPHK1	SPINK5	SPRY2	STAB1	STAT3	TEK	TGFB2	THBD	THY1	TIE1	TNFRSF10B	TNFRSF1A	TNFRSF1B	TNFSF10	TNFSF12	TNFSF15	TNFSF4	TNNI3	VCAM1	VIM	VWF

Heart (86 genes included)																																																																																																																																										
Included:	ACTA1	ACTA2	ACTG1	ACTN1	ALCAM	ALPK3	ANXA6	BMP10	BMP2	BMPR2	CAMK2A	CAMK2B	CAMK2D	CAMK2G	CASQ2	CAV2	CAV3	CD34	CDH15	CDH2	CDH5	CEACAM1	CEACAM6	CENTA2	CITED2	DES	DVL1	DVL3	ECE2	ERBB2	FABP3	FBN1	FCGR3A	FCGR3B	FGF12	GATA2	GATA4	GJA1	GLI2	HAND1	HAND2	HESX1	IRGM	IRX4	ISL1	KDR	KIT	KLF5	LAMP2	MEF2C	MKKS	MKL1	MYBPC3	MYH11	MYH3	MYH6	MYH7	MYL2	MYOG	MYOM2	NCOA6	NF1	NFYA	NKX2-5	NKX2-6	NOTCH1	OSR1	PECAM1	PLCE1	POU6F1	SHH	SHOX2	SLC2A4	SRF	SRI	T	TAZ	TBX1	TBX5	TDGF1	TEK	TGFB2	TNNI3	TNNT2	VANGL2	VCAM1																													

Lymphoid cells (115 genes included)																																																																																																																			
Included:	ANPEP	BMPR1A	BST2	CD14	CD19	CD1D	CD2	CD22	CD24	CD244	CD247	CD27	CD276	CD28	CD34	CD38	CD3D	CD3E	CD4	CD40	CD44	CD5	CD6	CD69	CD70	CD72	CD79A	CD80	CD84	CD86	CD8A	CD8B	CD96	CEACAM1	CEACAM5	CEBPG	CTLA4	DNTT	DPP4	ENPEP	FAIM2	FAS	FASLG	FCER2	FCGR2A	FCGR2B	FCGR2C	FCGR3A	FCGR3B	FSTL3	GATA3	GIMAP4	HDAC4	HDAC5	HDAC7A	HDAC9	HLA-DRA	HOXB3	ICAM1	ICAM2	IFNGR1	IGHD	IGHM	IL11	IL12B	IL1R1	IL1RN	IL2	IL27	IL2RA	IL2RB	IL4	IL4R	IL6R	IL7	IL7R	INHA	INHBA	ITGAE	ITGAL	ITGAM	ITGAV	ITGAX	ITGB2	ITGB7	JAG2	KIT	LAMP1	LCK	MME	MS4A1	NCAM1	NCR3	NFAM1	NHEJ1	PECAM1	PTPRC	SART1	SDC1	SELL	SLC3A2	SOCS5	SPEN	SPINK5	SPN	TBX21	TFRC	THY1	TNFRSF4	TNFRSF9	TPD52	TRA@	TRIM22	VPREB3	ZAP70

Myeloid cells (111 genes included)																																																																																																																			
Included:	ABCB7	ACIN1	ACVR1B	ACVR2A	ALAS2	ANPEP	C10orf137	CALCA	CARTPT	CD14	CD1D	CD2	CD24	CD33	CD34	CD36	CD38	CD4	CD40	CD44	CD80	CD86	CD8A	CD8B	CDC42	CDK6	CEACAM1	CEACAM5	CEBPG	CPA3	CR1	CSF1	CSF1R	CSF2RA	CSF3R	DYRK3	ENG	EPX	ERMAP	ETS1	ETV2	FCGR2A	FCGR2B	FCGR2C	FCGR3A	FCGR3B	FUT4	GAS6	GCNT2	HBS1L	HCLS1	HFE	HLA-DRA	IFI16	IFNGR1	IL11	IL1R1	IL1RN	IL2RA	IL31RA	IL4	IL6R	IL7R	INHA	INHBA	ITGA2B	ITGA5	ITGA6	ITGAL	ITGAM	ITGAV	ITGAX	ITGB2	ITGB3	KIT	LAMP1	LAMP2	LDB1	LRP1	LYN	MAEA	MAFB	MEIS1	MMP9	MNDA	MPL	MYH9	MYST1	MYST3	NCOA6	NMT1	PECAM1	PF4	PTPRC	RASGRP4	RPS19	RUNX1	SCIN	SELL	SELP	SNRK	SPI1	SPN	TFRC	THY1	TM7SF4	TMEM176B	TRIB1	VNN2	ZBTB16	ZNF675				

Liver (59 genes included)																																																																																																																			
Included:	AFP	AKR1C4	ALB	APOE	APOF	ARG1	ARID1A	C4BPB	C8A	CD44	CEBPB	CPN1	CPN2	CRP	CRYGA	CTH	CYP3A7	CYP4F11	DDT	DHODH	F12	FABP1	FLJ34306	FMO3	FOXA2	G6Pc	GATA4	GCGR	GCKR	HABP2	HAO1	HHEX	HNF1A	HNF1B	HNF4A	HTATSF1	IGFALS	ITGA6	ITGB1	ITIH2	LECT2	LIPC	LPA	MBL2	MET	ONECUT1	PROX1	RDH16	RXRA	SEC15L2	SLC22A1	SLC25A20	SLC2A1	SLC6A12	SPP2	TAT	TBX3	THY1	UGT2B4																																																								

Pancreas (67 genes included)																																																																																																																			
Included:	ABCB10	ALMS1	ARHGEF15	ARX	B3GNTL1	C16ORF80	C1ORF77	CCL27	CEP152	CIB2	CPA1	CPA2	CTDSPL	EPB41	ERCC2	FLJ20152	FOXA2	FOXH1	FSHR	GAD2	GCG	HAS1	HES1	HHEX	INS	INSSA2	ISL1	ITGA6	KCND1	KCTD7	LOC143286	MAFA	MAPK13	MEP1A	MNX1	MUC1	NCR2	NEUROD1	NEUROG3	NKX2-2	NKX6-1	NRP2	ONECUT1	PAK3	PAX4	PAX6	PDX1	PML	PMS2L5	PNLIPRP1	PRDM1	PTF1A	RANBP6	RBPJ	RUNX2	SEC15L2	SEL1L	SERPINI2	SLC2A2	SOX9	SPDEF	SST	STX11	SYP	VASH1	YTHDC1	ZBTB25																																																

Epithelium (30 genes included)																																																																																																																			
Included:	BCL10	CD46	CEACAM1	CELSR1	DMBT1	EGFR	EHF	ELF3	EPCAM	ERBB2	FGF10	GLI2	KRT14	KRT3	KRT4	KRT8	LAMA1	LAMB1	LAMC1	LMO4	NME1	NME2	SPINK5	TGFA	TIMELESS	UPK1A	UPK1B	UPK2	UPK3A	VANGL2																																																																																					

Motor neuron (25 genes included)																																																																																																																																																																																																					
Included:	FBXW7	FOXO3	HOXA1	HOXA2	HOXA5	HOXA9	HOXC4	HOXC9	ISL1	ISL2	MEF2C	MNX1	NCAM1	NEUROD1	NKX2-2	NKX6-1	NR2F1	OLIG2	ONECUT1	ONECUT2	PAX6	POU2F1	PROX1	SHH	SOX1																																																																																																																																																																												

Monocytes-macrophages (52 genes included)																																																																																																																																																																																																					
Included:	ANPEP	CD14	CD1D	CD2	CD24	CD33	CD38	CD4	CD40	CD44	CD80	CD86	CD8A	CD8B	CEACAM1	CEACAM5	CR1	CSF1R	CSF2RA	FCGR2A	FCGR2B	FCGR2C	FCGR3A	FCGR3B	FUT4	ICAM1	IFNGR1	IL1R1	IL1RN	IL2RA	IL6R	IL7R	ITGA4	ITGA6	ITGAL	ITGAM	ITGAX	ITGB1	ITGB2	LAMP1	LAMP2	MNDA	NMT1	PECAM1	PTPRC	SELE	SELL	SELP	SPN	THY1	TMEM176B	VNN2																																																																																																																																																	

ISCI_geneSet (93 genes included)																																																																																																																																																																																																					
Included:	ACTC1	AFP	BXDC2	CD34	CD9	CDH5	CDX2	CGB	COL1A1	COL2A1	COMMD3	CRABP2	DDX4	DES	DIAPH2	DNMT3B	EDNRB	EOMES	FGF4	FGF5	FLT1	FN1	FOXA2	FOXD3	GABRB3	GAL	GATA4	GATA6	GBX2	GCG	GCM1	GDF3	GFAP	GRB7	HBB	HBZ	IAPP	IFITM1	IFITM2	IGF2BP2	IL6ST	INS	ISL1	KIT	KRT1	LAMA1	LAMB1	LAMC1	LEFTY1	LEFTY2	LIFR	LIN28	MNX1	MYF5	MYOD1	NANOG	NES	NEUROD1	NODAL	NOG	NPPA	NR5A2	NR6A1	NUMB	OLIG2	PAX4	PAX6	PDX1	PECAM1	PODXL	POU5F1	PTEN	PTF1A	REST	RUNX2	SEMA3A	SERPINA1	SFRP2	SOX17	SOX2	SST	SYCP3	SYP	T	TAT	TDGF1	TERT	TFCP2L1	TH	UTF1	WT1	XIST	ZFP42																																																																																																								

Computational_geneSet (197 genes included)																																																																																																																																																																																																					
Included:	ABCA4	ABCC2	ACE	ACO1	ACPP	ADAMTS13	ALOX15	AMH	APBB1	AQP4	AR	AREG	AREGB	ARSA	ATP2A3	BCL2	BDNF	BGN	BIK	BMP2	BMP4	BMP7	BRCA1	CACNA1C	CACNA1H	CALCRL	CASP10	CCKBR	CCL11	CCR5	CD22	CD24	CD36	CD44	CD82	CDC27	CDH1	CDH13	CDH2	CDH3	CDKN2A	CDKN2B	CDX2	CEACAM1	CFTR	CHRM3	CHRNA7	CHRNE	CLCN1	CLDN1	CLDN3	CLDN4	CNTF	COL10A1	COL17A1	COL2A1	COL3A1	COL4A6	COMP	CP	CX3CL1	CXCL12	CYP1A1	DARC	DCC	DDC	EIF4G1	ENPP1	EPHB2	ERBB3	ERCC2	F11	F13A1	F2RL1	F5	FBLN1	FBN1	FGF1	FGF7	FLNA	FLT4	FMO3	FOLH1	FOLR1	FOXC1	FRAP1	FSHR	GATA2	GATA3	GATA4	GBA	GCK	GJB1	GNE	GSTA1	GSTT1	HIST1H2BC	HNF1B	HOXA10	HOXA9	HOXB7	HTR1B	IGFBP2	IGFBP5	IL8	INHBA	IRS1	ITGA2B	ITGAX	ITGB3	JUN	KCNA5	KCNQ1	KLF6	L1CAM	LAMA1	LCAT	LMNA	LOX	LPL	LRP2	LTC4S	MAGEA1	MAGEA2B	MAP4	MAPK14	MAPK3	MAPT	MITF	MME	MMP1	MMP12	MMP3	MPL	MUC1	MUC4	NAMPT	NCAM1	NGFR	NKX2-1	NOS3	NOX1	NPR1	NQO1	NR3C1	NR4A1	NRG1	NRP1	NUMA1	OPRM1	P2RX7	PAH	PAX6	PAX8	PLA2G2A	PML	POLG	PPARG	PPARGC1A	PRDX2	PRKACA	PSMC2	PTGS2	PTN	PXN	RAD51	RAPGEF3	REN	RGS4	ROCK1	RPS6KA5	SCNN1B	SDC2	SERPINA5	SHBG	SLC16A1	SLC19A1	SLC26A4	SLC6A4	SMC1A	SRY	STAT3	TACR1	TACSTD1	THPO	TLR4	TNFRSF11B	TOP2A	TOR1A	TRAF2	TRPV6	TSHR	UCP2	UGT1A1	VCL	VDAC1	VIP

DNA_methylation_mostVariable (50 genes included)																																																																																																																																																																																																					
Included:	AGBL2	AKAP12	ASB3	C12orf56	CALCB	CAT	CCDC11	CD14	COMT	CR1L	CRCT1	CRYGD	CSRP1	CYP2E1	DENND2D	FAM24B	GP5	HIST1H3C	HTRA4	KAAG1	KBTBD12	MOS	NPY	PAPOLB	PAQR6	PCDHA2	PEG3	PF4	PKD2L2	PLEK2	PON3	POU5F1	PPYR1	PRDXDD1P	RAET1L	REM1	RGPD2	RLN1	RLN2	S100A6	SLFN13	ST8SIA4	TF	ZNF248	ZNF354C	ZNF454	ZNF528	ZNF667	ZNF737	ZNF876P																																																																																																																																																			

Gene_expression_mostVariable (50 genes included)																																																		
Included:	AFP	APOA1	APOA2	APOB	CAT	CER1	CH25H	COL3A1	COL6A3	CST1	CXCR4	DKK1	DLK1	EGR1	EGR3	FGB	FGG	FOS	FZD10	GREM1	HAPLN1	HOXA1	HOXB2	IGFBP7	LEFTY1	LEFTY2	LGI1	LRRC17	LRRN3	LUM	MEG3	MEIS2	MMP1	MSX1	NLRP2	NPPB	NPTX1	NR2F1	PAX6	PTX3	PYCR2	SERPINA1	STMN2	TFF1	TGFBI	TRBC1	TRBC2	TTR	WLS	ZIC1
